Citing Hubzero

Please cite Hubzero in any research that uses or extends Hubzero. Please cite the primary publication for project-wide citations. There are also several publications on more specific topics and by year, listed below.

Hubzero Primary Publication

If you use the Hubzero Platform, have extended the platform to fit your science or area of research, or would like to reference the Hubzero cyberinfrastructure, please cite this publication:

McLennan, M., and Kennell, R. (2010). "HUBzero: a platform for dissemination and collaboration in computational science and engineering." Computing in Science & Engineering 12.2 (2010): 48-53.

Citing Specific Hubzero Components / Features

Cite these papers if you want to cite a particular aspect of the Hubzero Platform.

Audience and User Metric Tracking

McKay, D., Zentner, M. and Klimeck, G. (2018). “Clustering Download Events to Identify Classrooms”. Gateways 2018, Austin, TX, USA, 25-27, Sept. 2018.

Data Management

Caldrone, S, and Stirm, C. (2019). “Purdue University Research Repository: Adapting When Small Data Gets Bigger.” Gateways 2019, San Diego, CA, USA, 23-25 Sept. 2019.

Visualization / Tools

Denny, N., Zentner, M., and Klimeck, G. (2018). “Visualizing User Interactions with Simulation Tools”. Gateways 2018, Austin, TX, USA, 25-27, Sept. 2018.
Huebner, E. (2018). “From Linux Desktop Tools to Jupyter Notebooks to Web-based Widgets: Deploying Your Application on the Hubzero Platform”. Gateways 2018, Austin, TX, USA, 25-27, Sept. 2018.

Hubzero Platform Publications by Year

Papers and presentations listed below were authored/co-authored by one or more Hubzero team members.

2022

McLaughlin, M. Heatherly, S. A., Blumer, H., Olszanski, T., Lorimer, D., Kisseberth, N., Stirm, C., and Smith, J. (2022). “The Pulsar Science Collaboratory: Exploring Pulsars through a Science Gateway.” Gateways 2022, 18 Oct. 2022.
Casas-Silva, E., Stirm, C., Meunier, P., Cheung, B. (2022). “The National Cancer Institute’s Community Hub: A resource for collaboration and sharing of data, tools, and standards among the cancer research community.” Gateways 2022, 18 Oct. 2022.
Klimeck, G., Zentner, L., Strachan, A., Zentner, M. (2022). “Driving Sustainability of a Gateway with a Customer Relationship Management (CRM) System.” Gateways 2022, 19 Oct. 2022.
Alameda, J., Stirm, C., Bauer, G., Boerner, T., Bode, B., Dahan, M., Gropp, W., Pierce, M., Yewdall, C., Zentner, M., Babbar-Sebens, M., Barton, M., Bianchi, D., Bell, M., Boufadel, M., Cianfrocco, M., Cleveland, S., Daskiran, C., Fagnan, K., Fox, G., Garyfallidis, E., Hajjar, J., Klimeck, G., Miller, M., Perri, M., Pinks II, V., Ramamurthy, M., Regenwetter, M., Roberts, A., Romero, A., Song, C., Strachan, A., Tadmor, E., and Tucker, G. (2022). “The Delta Gateway: Exploring Community Use of GPU Resources through a Science Gateway.” Gateways 2022, 20 Oct. 2022.

2021

Stirm, C., Snodgrass, N., Gesing, S., and Zentner, M. (2021). “M inisymposterium: Establishing Online Science Communities - Three Science Gateway Examples.” 2021 SIAM Conference on Computational Science and Engineering, Virtual, 3 Mar. 2021.

2020

Graves, J. B., Stirm, C., and Zentner, M. (2020). “HUBzero® Hubdrive Prototype for Projects and Publications.” Gateways 2020, Virtual, 12-23 Oct. 2020.
Benson, A., Macdonald, L., Stirm, C., and Fuentes, A. (2020). “I ntercultural Learning Hub (HubICL).” Gateways 2020, Virtual, 12-23 Oct. 2020.

2019

Benham, D., and Gesing, S. (2019). “HUBzero© Goes OneSciencePlace: The Next Community-Driven Steps for Providing Software-as-a-Service.” 2019 15th International Conference on eScience (eScience), San Diego, CA, USA, 24-27 Sept. 2019.
Caldrone, S, and Stirm, C. (2019). “Purdue University Research Repository: Adapting When Small Data Gets Bigger.” Gateways 2019, San Diego, CA, USA, 23-25 Sept. 2019.
Gesing, S., Benham, D. and the HUBzero© team (2019). “OneSciencePlace: Sustainability Measures for a Science Gateway Framework.” 2019 Collegeville Workshop on Sustainable Scientific Software (CW3S19), Collegeville, MN, USA, 22-24 July 2019.
Gesing, S., Stirm, C., Zentner, M., Haley, B., Clark, S., and the HUBzero Team. (2019). “HUBzero®: Novel Concepts Applied to Established Computing Infrastructures to Address Communities’ Needs.” PEARC '19: Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), Chicago, IL, USA, 2019, July 28 - August 1, 2019.
Hunt, M. (2019). “Jupyter Notebooks on Hubs.” Web.
Stirm, Claire, et al. (2019). "REMEDI central—expanding and sustaining a medical device community." Future Generation Computer Systems, 101, p. 372-380.
Stirm, C., Gesing, S., Zentner, M., Klimeck, G., Zentner, L. and Dearborn, C. (2019). “HUBzero’s Variations of Sustainability: From Simulation/Modeling Tools to Communities.” IWSG 2019 (11th International Workshop on Science Gateways), Ljubljana, Slovenia, 12-14 June 2019.
Wang, Chen, et al. (2019). "Social Media Intelligence and Learning Environment: an Open Source Framework for Social Media Data Collection, Analysis and Curation." 15th International Conference on eScience (eScience) IEEE, San Diego, CA, USA, 23-25 Sept. 2019.

2018

Denny, N., Zentner, M., and Klimeck, G. (2018). “Visualizing User Interactions with Simulation Tools”. Gateways 2018, Austin, TX, USA, 25-27, Sept. 2018.
Huebner, E. (2018). “From Linux Desktop Tools to Jupyter Notebooks to Web-based Widgets: Deploying Your Application on the Hubzero Platform”. Gateways 2018, Austin, TX, USA, 25-27, Sept. 2018.
McKay, D., Zentner, M. and Klimeck, G. (2018). “Clustering Download Events to Identify Classrooms”. Gateways 2018, Austin, TX, USA, 25-27, Sept. 2018.
Zentner, M., and Song, C. X. (2018). "Solving Science Gateway Sustainability as a Community: MyGeoHub. org and OneSciencePlace. org." American Geophysical Union, Fall Meeting 2018: IN31A-01, Washington, D.C., USA, 10-14 Dec. 2018.
Zentner, Michael et al. (2018). “Using Automatic Detection and Characterization to Measure Educational Impact of Nanohub”. Gateways 2018, Austin, TX, USA, 25-27, Sept. 2018.

2017

Benham, D., and Zentner, M. (2017). “cvfHUB: A Gateway Supporting Microsoft Windows in Engineering Workflows”. Gateways 2017, Ann Arbor, MI, USA, 23-25, Oct. 2017.
Junk, D., et al. (2017). “REMEDI - Where Hospitals Share Data for the Improvement of Patient Safety”. Gateways 2017, Ann Arbor, MI, USA, 23-25, Oct. 2017.
Kalyanam, R., et al. (2017). "Cloud-enabling a Collaborative Research Platform: The GABBs Story." Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact 2017: 1-8, New Orleans, LA, USA, 9-13, July 2017.
Kearney, D., and Hunt, M. (2017). “Integrating Web Applications into the HUBzero Gateway Platform”. Gateways 2017, Ann Arbor, MI, USA, 23-25, Oct. 2017.
Olabarriaga, S., Gesing, S., Stirm, C., Shawn, R., and Zentner, M. (2017). “HUBzero Platform as Brick for Open Science Construction.” Digital Infrastructures for Research 2017, Brussels, Belgium, 30 November - 1 December 2017.
Saxena, A., Joshi, R., Darbari, H., Zentner, M., Wojkivich, K., Bhat, A., Srivastava, A., Buetow, K., Mazurek, C., and Gesing, S. (2017). “ICTBioMed NCIP Science Gateway: A Hub for Collaborative Cancer Research.” Gateways 2017, Ann Arbor, MI, USA, 23-25, Oct. 2017.
Saxena, A., Joshi, R., Darbari, H., Mazurek, C., Bhat, A., Srivastava, A., Wojkovich, K., Buetow, K. and Gesing, S. (2017). “The ICTBioMed NCIP Hub: Cancer Research in a Science Gateway on World-Wide Scale.” IWSG 2017 (9th International Workshop on Science Gateways), Poznan, Poland, 19-21 June 2017.

2016

Kalyanam, R., Campbell, R., Wilson, S., Meunier, P., Zhao, L., Hillery, B. A., & Song, C. (2016). “Integrating HUBzero and iRODS: Geospatial Data Management for Collaborative Scientific Research.” iRODS User Group Meeting, Chapel Hill, NC, USA, 7-9 June 2016.
McLennan, Michael. (2016). "Tool GUIs with HUBzero Rappture: What's under the hood?." Web.
McLennan, Michael. (2016). "MATLAB or Octave tools with a Rappture GUI." Web.
Stirm, C., and Huebner, E. (2016). "Hubzero Tutorials: Contributing Tools." Web.
Zentner, M., and Zink, R. (2016). "HUBzero and CatalyzeCare: A community driven platform for data sharing and collaboration in medical informatics research." IWSG 2016 (8th International Workshop on Science Gateways), Rome, Italy, 8-10 June 2016.

2015

Howison, J., et al. (2015). "Understanding the scientific software ecosystem and its impact: Current and future measures." Research Evaluation, Volume 24, Issue 4, October 2015, Pages 454–470, https://doi.org/10.1093/reseval/rvv014.
Hunt, M., et al. (2015). "PUQ: A code for non-intrusive uncertainty propagation in computer simulations." Computer Physics Communications 194 (2015): 97-107.
McLennan, M., et al. (2015). "HUBzero and Pegasus: integrating scientific workflows into science gateways." Concurrency and Computation: Practice and Experience 27.2 (2015): 328-343.
McLennan, M. (2015). "HUBzero: A Platform for Scientific Research, Education, and Collaboration." HUBzero Team Presentation, West Lafayette, IN, USA, 17 Mar. 2015.
McLennan, M. (2015). "The World of HUBzero." Web.
Thompson, C., et al. (2015). "Bring the NLACE model online using XSEDE and HUBzero." Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, St. Louis, MO, USA, 26-30, July 2015.

2014

McLennan, M. (2014). "nanoHUB: Your Workday on Steroids." Network for Computational Nanotechnology, West Lafayette, IN, USA, 24 Jun 2014.

2013

Huebner, E. (2013). "Getting Started with HUBzero/VM Setup." Web.
Farnsworth, V., et al. "nanoHUB-U: A science gateway ventures into structured online education." IEEE-NANO 2013 (2013 13th IEEE International Conference on Nanotechnology IEEE Beijing, China, 5-8 Aug. 2013.
McLennan, M., et al. (2013). "Bringing scientific workflow to the masses via pegasus and hubzero." parameters 13 (2013): 14.
McLennan, M. (2013). "HUBzero: A Web-based Platform for research, Education and Scientific Collaboration." Web.
McLennan, M. (2013). "Overview: The HUBzero Platform for Scientific Collaboration." Web.
Joglekar, G., et al. (2013). "HUB Application for Managing Experimental Knowledge." Web.

2012

McLennan, M. (2012). "Rappture Bootcamp: Building and Deploying Tools." Web.

2011

Adams III, G., and McLennan, M. (2011). "HUBzero Roadmap and Community Feedback." Web.
Gerhard K., Zentner, L., Madhavan, K., Farnsworth, V., and Lundstrom, M. (2011). “Network for Computational Nanotechnology – A Strategic Plan for Global Knowledge Transfer in Research and Education,” IEEE NMDC 2011 (IEEE Nanotechnology Materials and Devices Conference), Jeju-do, South Korea, 18-21, Oct. 2011.
Klimeck, G., et al. (2011). "Social Networks of Researchers and Educators on nanoHUB. org." 2011 11th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing IEEE, Newport Beach, CA, USA, 23-26 May 2011.
McLennan, M. (2011). "Managing Data within the HUBzero™ Platform." Omics: a journal of integrative biology 15.4 (2011): 247-249.

2010

McLennan, M., and Kennell, R. (2010). "HUBzero: a platform for dissemination and collaboration in computational science and engineering." Computing in Science & Engineering 12.2 (2010): 48-53.
McLennan, M. (2010). "The hub concept for scientific collaboration." Web.

2009

McLennan, M. (2009). "Introducing the Rappture Toolkit." Web.
McLennan, M. (2009). "Developing Scientific Tools for the HUBzero Platform." Web.

2008

Klimeck, G., McLennan, M., Brophy, S., Adams III, G., and Lundstrom, M. (2008). "nanoHUB.org: Advancing Education and Research in Nanotechnology," IEEE Computers in Engineering and Science (CISE), Vol. 10, pp. 17-23, 2008, doi:10.1109/MCSE.2008.120.